SE2841076

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10081
  • Sorghum bicolor
  • SE2841076
  • CACTA
  • Ca1
  • chromosome_5:59139721-59139905
  • TAG
  • GCACTACCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    T      ---T   AG  CTCCTAGTGTTTTTAATTAGTAGTAAAACACTGCCACTAGTTATAGCACTAGGGAATCCTCACTAGGAGA
  GCAC ACCAAA    TGG  TT                                                                      
  |||| ||||||    |||  ||                                                                      C
  TGTG TGGTTT    AGT  GA                                                                      
GA    T      TAAA   -T  AGAGGATCACTACACCCAAAGAGGATCACAAAAGCGTAAGTTTTAAATCATATTTGAAAGGGATCATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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