Plant MITE

SE2811078

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10083
Sorghum bicolor
SE2811078
Tc1/Mariner
St13
chromosome_6:46200358-46200595
TA
TACTCAATCCATCCCAAATTATAAGACATTTGACTTTTTGACACCAACTTTGACCATTCGACTTATTCAAAAATTTGTA

Secondary structure and sequence

TSD TIR

5'

3'

     AA                    A           -  CAC   C            A      --C       -    ------   -----------     CACTTCTTTTGTCGTGGTTTG
TACTC  TCCATCCCAAATTATAAGAC TTTGACTTTTT GA   CAA TTTGACCATTCG CTTATT   AAAAATT TGTA      CAA           ACTAT                     
|||||  |||||||||||||||||||| ||||||||||| ||   ||| |||||||||||| ||||||   ||||||| ||||      |||           |||||                     G
ATGAG  AGGTAGGGTTTAATATTCTG AAACTGAAAAA CT   GTT AAACTGGTGAGC GAATAA   TTTTTAA ACGT      CAG           TAAGA                     
     GG                    C           A  AGA   C            A      ATT       T    TTATAT   TTTAAATTCAG     ACTTCTTGAAAATAATTATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2811078

TACTCAATCCATCCCAAATTATAAGACATTTGACTTTTTGACACCAACTTTGACCATTCGACTTATTCAAAAATTTGTACAAACTATCACTTCTTTTGTCGTGGTTTGGTTTATTAATAAAAGTTCTTCAAGAATGACTTAAATTTGACTATATTTGCATAATTTTTTTAAATAAGACGAGTGGTCAAACTTGAGATCAAAAAAGTCAAACGTCTTATAATTTGGGATGGAGGGAGTA

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