SE2851080

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10085
  • Sorghum bicolor
  • SE2851080
  • PIF/harbinger
  • To13
  • chromosome_1:59487654-59487944
  • TAA
  • AGAGCAACTCCAAGAGCTTGGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                        TTC      TAGAGACTATTTTAGAATTTGCATAGCAAAAAGTAGGCTCCAACAGATGTGCTATCTGGTTTTGTAAAATAGAAAGTTGGCTATCCCTTGATTTTCGGTGGTCATATCATA
  AGAGCAACTCCAAGAGCTTGGCTA   TTGTTG                                                                                                               
  ||||||||||||||||||||||||   ||||||                                                                                                               T
  TCTCGTTGAGGTTCTCGAACCGAT   TTAATC                                                                                                               
AA                        --T      ATCGATTAAAGTAACAAATCGATAAAACATTTTTTGATGAATTGTTTCTTCTTCAGGTGTTGTCGGAACGATAAAATGTTTTAGTCTATCGGTCACAGTCACCAACTGATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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