SE2831082

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10087
  • Sorghum bicolor
  • SE2831082
  • hAT
  • Hat70
  • chromosome_10:59616106-59616394
  • CAGCCAGG
  • GCCAGGCAGTGGCGGATCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
  CA  CAG          A    GAATTTTAA     AG   AC    GAAAACGATATAGTTCATCGATATGAACATAACATAATTAGATCACTAAACGGTAATAAAATAGTTGTGAATATAGAGTGTTAAGGTTGTTATATAAGCTGAGT
    GC   GCAGTGGCGG TCTA         TCATG  GGT  GAAC                                                                                                        
    ||   |||||||||| ||||         |||||  |||  ||||                                                                                                         
    CG   CGTCACCGCC AGAT         CTCAT  CAT  CGTA                                                                                                        
GGAC  --A          A    ---------     --   --    CCCCCCTGTCGACAGGGGGGTTTAAAAAAACTTTTTGTAAATTATACATATGAAAAATTATTATATATATACATATTATGTAACAATATGTATTAACGATCAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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