Plant MITE

SE2851083

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10088
Sorghum bicolor
SE2851083
PIF/harbinger
To1
chromosome_2:76403885-76404368
TTA
AGGCCTTGTTTAG

Secondary structure and sequence

TSD TIR

5'

3'

TT             ---  G     AGTTTTTGGATTTTGACACCGTAGCATTTTCGTTTTTATTTGACAAACATTGTCTAATTATGGAGTAACTAGGCTTAAAAGATTCGTCTCGTGATTTACAGGTAAACTGTGCAATTAGTTATTCTTTTTATCTATATTTAATACTTCATGCATGTGCCGCAAGATTCGATGTGACGGAGAATCTTGTAAAGTTTTGGGTTTTTGGGTATATCTAAACA
  AGGCCTTGTTTAG   AT CAAAA                                                                                                                                                                                                                          
  |||||||||||||   || |||||                                                                                                                                                                                                                           
  TCCGGAACAAATC   GC TTTTC                                                                                                                                                                                                                          
AT             AAA  -     ACTTTTGAAAAGCCATGACATCGTGAAAGCAAACAAACACTGTTTATAATAGATTAATACCTGATTGATCCTAATTTTCTAAGCAGAGCACTAAATGTCGATTTGACACATTAATAAAAAATAAAAGCAGATATAAATCACGAAGTACGTACACGGCTTTCTAAGCTACACTGCCCCTTAGAACTTTTGAAAAACCAAAAGTCCCACTTGATTCCGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851083

TTAGGCCTTGTTTAGATGCAAAAAGTTTTTGGATTTTGACACCGTAGCATTTTCGTTTTTATTTGACAAACATTGTCTAATTATGGAGTAACTAGGCTTAAAAGATTCGTCTCGTGATTTACAGGTAAACTGTGCAATTAGTTATTCTTTTTATCTATATTTAATACTTCATGCATGTGCCGCAAGATTCGATGTGACGGAGAATCTTGTAAAGTTTTGGGTTTTTGGGTATATCTAAACAAGGCCTTAGTTCACCCTGAAAACCAAAAAGTTTTCAAGATTCCCCGTCACATCGAATCTTTCGGCACATGCATGAAGCACTAAATATAGACGAAAATAAAAAATAATTACACAGTTTAGCTGTAAATCACGAGACGAATCTTTTAATCCTAGTTAGTCCATAATTAGATAATATTTGTCACAAACAAACGAAAGTGCTACAGTACCGAAAAGTTTTCACTTTTCGAAACTAAACAAGGCCTTA

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