Plant MITE

SE2831084

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10089
Sorghum bicolor
SE2831084
hAT
Hat63
chromosome_2:9175467-9176020
GATGCAAA
TGCAAATAAGGATGGCAGCGGGGCGGTTTCGGGTCGG

Secondary structure and sequence

TSD TIR

5'

3'

GA    AA                    T          --AT     -- -  GTTTCGGTTCTCGCGGGTTCGGTTTTGGGGATGATTTTTCACCCACGGTTTTCGGGTTCGGGGCCCCGAAACCTATCGGGTTCGGTTTCGGGTTTGGTTTTCCACCCGTGGATATCCAATGGATATCCGAAATGAGTCATTAGAATTAATTTTTATATTTTATAATATGATGATAATAACTTTTTACTTAGATTATGAAATTTATTTTAAGCTAACTCATGAAAA
  TGCA  TAAGGATGGCAGCGGGGCGG TTCGGGTCGG    ATCCG  C GG                                                                                                                                                                                                                                 
  ||||  |||||||||||||||||||| ||||||||||    |||||  | ||                                                                                                                                                                                                                                 T
  ACGT  ATTCCTACCGTTGCCCCGCC AAGCCTAGCC    TCAGA  C CG                                                                                                                                                                                                                                 
AA    AG                    C          CACT     TA A  TGGACTTGGACTTTGGGCTTTAGCTTTGGGCTTTGGCTTGGCTTGTGGCTAAGCCCACTTTTGGGGAGGGGTTTTGGTTTGGGCGCCTATGGGCTTTGGGCTTACCTATGGGCTTTGGGCGAAAGATACAGTTGTATTATTATCGTTATTCCTGAAAGATATTTATATATGTACTATATATATGTGTATAAATGTACATATTTGTTCTCCGTTATTTTGTATTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831084

GATGCAAATAAGGATGGCAGCGGGGCGGTTTCGGGTCGGATATCCGCGGGTTTCGGTTCTCGCGGGTTCGGTTTTGGGGATGATTTTTCACCCACGGTTTTCGGGTTCGGGGCCCCGAAACCTATCGGGTTCGGTTTCGGGTTTGGTTTTCCACCCGTGGATATCCAATGGATATCCGAAATGAGTCATTAGAATTAATTTTTATATTTTATAATATGATGATAATAACTTTTTACTTAGATTATGAAATTTATTTTAAGCTAACTCATGAAAATATTTATGTTTTATTGCCTCTTGTTTATACATGTAAATATGTGTATATATATCATGTATATATTTATAGAAAGTCCTTATTGCTATTATTATGTTGACATAGAAAGCGGGTTTCGGGTATCCATTCGGGTTTCGGGTATCCGCGGGTTTGGTTTTGGGGAGGGGTTTTCACCCGAATCGGTGTTCGGTTCGGTTTCGGGTTTCGATTTCGGGTTTCAGGTTCAGGTGCACATAGACTTCACCCGATCCGAACCCGCCCCGTTGCCATCCTTAGATGCAAA

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