Plant MITE

SE2831090

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10095
Sorghum bicolor
SE2831090
hAT
Hat4
chromosome_3:18256550-18256841
CTCTTAAG
CTTAAGTAGGGATGAAAACGGATCGGATA

Secondary structure and sequence

TSD TIR

5'

3'

CT    --        T        AT      -    CG      ACCGATATCATATTTGTTTTCATATTTCTGGTCGGATTCGGATTCGAATACGGATAATGTCAATCATGTCGGATAAGATATGATTGGATATCGACATCATAAA
  CTTA  AGTAGGGA GAAAACGG  CGGATA CGAA  GATATC                                                                                                       
  ||||  |||||||| ||||||||  |||||| ||||  ||||||                                                                                                       T
  GAAT  TCATCCCT CTTTTGCC  GCCTAT AAAG  GCTGGC                                                                                                       
      TC        C        AT      A    --      ATAAGCTCTGGCTTAAGCAAATCTCTCCAAATCTAGACAGGTATAGGCTCAGGCTTACAAATTGTAGGCTATGGCATAGGCATAGGCTTATGAATTTAGCATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831090

CTCTTAAGTAGGGATGAAAACGGATCGGATACGAACGGATATCACCGATATCATATTTGTTTTCATATTTCTGGTCGGATTCGGATTCGAATACGGATAATGTCAATCATGTCGGATAAGATATGATTGGATATCGACATCATAAATATACGATTTAAGTATTCGGATACGGATACGGTATCGGATGTTAAACATTCGGACTCGGATATGGACAGATCTAAACCTCTCTAAACGAATTCGGTCTCGAATACGGTCGGAAAATATCCGTACCGTTTTCCTCCCTACTCTTAAG

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