Plant MITE

SE2851102

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10107
Sorghum bicolor
SE2851102
PIF/harbinger
To1
chromosome_4:59648167-59648414
TAT
GGCCTTGTTTAGATCCCAAATTTTTTTGGATTTC

Secondary structure and sequence

TSD TIR

5'

3'

TAT            ---       ---------       T       GATA    A    TTTCGTTTTTATTTGACAAATATTGTCCAATCATAAAGTAACTAGACTTAAAAGATTCGTCTCGCGATTT
   GGCCTTGTTTAG   ATCCCAA         ATTTTTT GGATTTC    CTGT GCAC                                                                      
   ||||||||||||   |||||||         ||||||| |||||||    |||| ||||                                                                      A
   CCGGAACAAATC   TGGGGTT         TGAAAAG TCTAAAG    GGCA GTGT                                                                      
TAT            AAG       TTTGGTTTT       T       ----    -    AGCTTAGAACACCGTGTACGTAATTCGTAATTTATATCTACTTTATTTTTGATTAACGTGTCAAACAGAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851102

TATGGCCTTGTTTAGATCCCAAATTTTTTTGGATTTCGATACTGTAGCACTTTCGTTTTTATTTGACAAATATTGTCCAATCATAAAGTAACTAGACTTAAAAGATTCGTCTCGCGATTTACAGACAAACTGTGCAATTAGTTTTTATTTCATCTATATTTAATGCTTAATGCATGTGCCACAAGATTCGATGTGACGGGAAATCTTGAAAAGTTTTTGGTTTTTGGGGTGAACTAAACAAGGCCTAT

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