SE2851107

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10112
  • Sorghum bicolor
  • SE2851107
  • PIF/harbinger
  • To1
  • chromosome_5:51285616-51285864
  • TCA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TC               CACC      TCCAAA       CAA      CC   A  TCGAATCTTGCGGCACATGCATGAAGCACTAAATATAGACGAAAACAAAAACTAATTACACAGTTTGTCTGTAA
  AGGCCTTGTTTAGTT    CCGAAA      AAGTTTT   GATTTC  GTC CA                                                                          
  |||||||||||||||    ||||||      |||||||   ||||||  ||| ||                                                                           
  TCCGGAACAAATCAA    GGCTTT      TTTAAAG   CTAAAG  ATG AC                                                                          
AC               ----      ------       --C      CG   -  ATCGTGAAAGCAAAAATAAACTATTTATAACAGGTTAGTATTTGATTGATCCTAGTTTTCTAAGCAGAGCACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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