Plant MITE

SE2851110

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10115
Sorghum bicolor
SE2851110
PIF/harbinger
To2
chromosome_1:2167464-2167712
ATA
GGCCTTGTTTAGTTCCGAAAAATTTTGGGAAAT

Secondary structure and sequence

TSD TIR

5'

3'

ATA                G -         G     ------   CA  GT  -- A  TTC    -   T   ACAAATATTATCTAATTATAGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTCGA
   GGCCTTGTTTAGTTCC A AAAATTTTG GAAAT      CGA  CT  AG  C CT   GTTT GTA TTG                                                           
   |||||||||||||||| | ||||||||| |||||      |||  ||  ||  | ||   |||| ||| |||                                                            
   CCGGAACAAATCAAGG T TTTTAAAAC TTTTA      ATA  AA  GG  A GT   GTAG TTA GAA                                                           
ATA                G C         G     AAAAGT   --  --  AC -  ---    C   -   ATCTGCGTACGTACTTCATAATTTATATTTACTTTTATTTTTGATTAACGTGTCAAACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851110

ATAGGCCTTGTTTAGTTCCGAAAAATTTTGGGAAATCGACACTGTAGCACTTTCGTTTGTATTTGACAAATATTATCTAATTATAGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTCGACCAAACTGTGCAATTAGTTTTTATTTTCATTTATATTTAATACTTCATGCATGCGTCTAAAGATTCGATGTGACAGGAAATATGAAAAATTTTGCAAAATTTTCTGGGAACTAAACAAGGCCATA

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