Plant MITE

SE2851115

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10120
Sorghum bicolor
SE2851115
PIF/harbinger
To4
chromosome_3:2942588-2942834
TAA
AGCCCTTGTTTAGTTCC

Secondary structure and sequence

TSD TIR

5'

3'

TA  C              CA     --  TATAAAATTTTAAAAAAAATCCCCATCACATCGAATCTTGCGGTACATGCATAGAACATTAAATATAGATAAAACAATAACTAATTATACAGTTT
  AG CCTTGTTTAGTTCC  AAAAT  TT                                                                                               
  || ||||||||||||||  |||||  ||                                                                                               G
  TC GGAACAAATCAAGG  TTTCA  AT                                                                                               
AA  C              --     AA  CGTTTTACTCGTAACATCGTGAAGTAAACATAAACTGTTTATAACAGGTTAACACCTGATTGATCCGAGTTTTCTAAAAAGAGCGTTTAATGTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851115

TAAGCCCTTGTTTAGTTCCCAAAAATTTTATAAAATTTTAAAAAAAATCCCCATCACATCGAATCTTGCGGTACATGCATAGAACATTAAATATAGATAAAACAATAACTAATTATACAGTTTGTCTGTAATTTGCGAGAAAAATCTTTTGAGCCTAGTTAGTCCACAATTGGACAATATTTGTCAAATACAAATGAAGTGCTACAATGCTCATTTTGCTAAAACTTTGGAACTAAACAAGGCCTAA

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