SE2851116

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10121
  • Sorghum bicolor
  • SE2851116
  • PIF/harbinger
  • To2
  • chromosome_1:59547733-59547981
  • TTA
  • AGGCCTTGTTTACTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                CACCCAAAAACGCAAAATTT     GATTTTCTGTCACATCGAATCTTTAGACACATGCATGGAGTATTAAATATAAATGAAAATAAAAACTAATTGCACAGTTTGGTCGAAATTG
  AGGCCTTGTTTACTTC                    TTCAA                                                                                           
  ||||||||||||||||                    |||||                                                                                            
  TCCGGAACAAATGAAG                    GCTTT                                                                                           
AT                -------------------A     ACTTTTAAAAGCACTGTGACATCGTGAAAGCAAACAAACACCATTAATAATAGATTGATATCTGATTGATCCAAGTTTTCTAAGCAGAGCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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