Plant MITE

SE2851126

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10131
Sorghum bicolor
SE2851126
PIF/harbinger
To15
chromosome_4:5439373-5439901
TAA
AGAGCATCTCCAACAGTTATGCAATTGGACTTTGC

Secondary structure and sequence

TSD TIR

5'

3'

TA     A                       CT    -----A    TGAAATTTGTCAAAAACTTTAAAAATTGCTCTCCAACAGTTTTGCATTTGACTTATGCATTTTGCCAAACTAGGCATTTGATGAACCAAACTTGGCATTTTTGCATAGGCACAATGGGTTGGCAATTTTGATATCCCAAGAATCTTGGACTCCTTGTCGTGCCCGTACTCCCCACGTCGCGGTAGTTTCCCGCGAGACGACTCCTCCGCGCGAGAGAATT
  AGAGC TCTCCAACAGTTATGCAATTGGA  TTGC      TTCT                                                                                                                                                                                                                            
  ||||| |||||||||||||||||||||||  ||||      ||||                                                                                                                                                                                                                             
  TCTCG AGAGGTTGTCAATACGTTAACCT  AACG      AACC                                                                                                                                                                                                                            
AA     A                       TT    ATAAAC    TCAAACGGTTCAGGGATTTGCAAAACGGTTTCCTTTTTATTCAAATAGAGGTTCACAAACTGTAAAAACTGAACCGTAAAGGGTTTTATCACCTGGGTTGATAAAAACAGGCCCTTAGAAAGTAGAAGCGCCCTTTAAGAGAGCGTGCAGCGCGCCCGCGAAAGAAAAAGCGCGCGTTAAGGAAGCGGGCAGCGCGCGTTAATGAAGCGGGCAGCGGCGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851126

TAAGAGCATCTCCAACAGTTATGCAATTGGACTTTGCATTCTTGAAATTTGTCAAAAACTTTAAAAATTGCTCTCCAACAGTTTTGCATTTGACTTATGCATTTTGCCAAACTAGGCATTTGATGAACCAAACTTGGCATTTTTGCATAGGCACAATGGGTTGGCAATTTTGATATCCCAAGAATCTTGGACTCCTTGTCGTGCCCGTACTCCCCACGTCGCGGTAGTTTCCCGCGAGACGACTCCTCCGCGCGAGAGAATTGGCGGCGACGGGCGAAGTAATTGCGCGCGACGGGCGAAGGAATTGCGCGCGAAAAAGAAAGCGCCCGCGCGACGTGCGAGAGAATTTCCCGCGAAGATGAAAGATTCCCGGACAAAAATAGTTGGGTCCACTATTTTGGGAAATGCCAAGTCAAAAATGTCAAACACTTGGAGATAAACTTATTTTTCCTTTGGCAAAACGTTTAGGGACTTGGCAAACTCCAACAAATAGCAATTTCCAATTGCATAACTGTTGGAGAAGCTCTAA

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