SE2851128

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10133
  • Sorghum bicolor
  • SE2851128
  • PIF/harbinger
  • To1
  • chromosome_6:44344607-44344844
  • TTA
  • AGGCCTTGTTTAGTTCCCAAAAATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                C A        -------     TTCCCGGTTATATCGAATCTTGCGACACATGCATAAAGTATTAAATATAGATAAAAAAGATAGCTAATTGCACAGTTTACC
  AGGCCTTGTTTAGTTC C AAAATTTT       CAAGA                                                                                 
  |||||||||||||||| | ||||||||       |||||                                                                                 T
  TCCGGAACAAATCAAG G TTTTAAAA       GCGAT                                                                                 
AT                C C        ATCCGAA     GATATCGTGAAAACCAAAATAAACTGTTAATAATAAGTTAATATCTGATTGATCTGAGTTTTCTAGACAGAGCATTTAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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