SE2831130

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10135
  • Sorghum bicolor
  • SE2831130
  • hAT
  • Hat33
  • chromosome_3:12966316-12966881
  • CTACAACA
  • CAATGTTTTAAATAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTACAACA                   ----      TCGCGCTATAGCGCCGCTATAGCGGCTAGAATAAGTCGACGCGAAGCTATACCTCATTTTTACGCTATCAGCGCTATTGGCGCTATAGCGCGCTATAGTGCCGCTAAACTGAAATAGCGCCATAGCGCCGCTATTTGCGCGCTATTACTGTTTATCTGTGATCATGTTGTCATGCACTTATTTCTTGTGTTGTGCTTATGCACTATGCAGTCATGCATTATGCTTATGAGTTAGTTATGTATTAAACA
        CAATGTTTTAAATAGCGCG    CTATTT                                                                                                                                                                                                                                                        
        |||||||||||||||||||    ||||||                                                                                                                                                                                                                                                         
        GTTACAAAATTTATCGCCC    TCTTTT                                                                                                                                                                                                                                                        
ACAACATC                   GATA      ATCTCAGAAGGACAGGGTCTGCGATAAACGCGATATCGCTTGCGATATCGCCGCGATATCGGGACGATATCGCCGACGACATGTGTCGTCGCACAACATCGATAGGTGCGATATCGCTGCGATATCGTCGCGATATCGCGCGATAAATAAACCTTTGTCTGTTTTATATATTATCTGTTGTTGTTCAAGTTTATTGGTAGTATAAAGTGTTAGTGTTTAGTGTTTAGTGTCCACAAAGTGTCAAATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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