SE2851134

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10139
  • Sorghum bicolor
  • SE2851134
  • PIF/harbinger
  • To1
  • chromosome_6:38101221-38101690
  • TAA
  • AGGCCTTGTTTAGTTGGCAAAAATTTTGGATTTTAGGTACTGTAGCACTTTCATTTGTTTGTGGTAAATATTGTCCAATAATAGA

Secondary structure and sequence

TSD    TIR
5'



3'
TA               GG       --     A    A  T              --A        TGG          C A  A     CAAA     G C        C                 C                            C  A       -A   T  A                         AA           ----------     --T         GCC
  AGGCCTTGTTTAGTT  CAAAAAT  TTTGG TTTT GG ACTGTAGCACTTTC   TTTGTTTG   TAAATATTGT C AT ATAGA    TTAGG T AAAAGATT ATCTTGTGATTTACAGG AAACTGTGTAATTAGTTTTTGTTTTCGT TA ATTTAAT  TTC AT CATGTGCCACAAGATTCGATGTGAC  GGAATCTTGAA          TTTTT   TGAACTAAG   
  |||||||||||||||  |||||||  ||||| |||| || ||||||||||||||   ||||||||   |||||||||| | || |||||    ||||| | |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| || |||||||  ||| || |||||||||||||||||||||||||  |||||||||||          |||||   |||||||||    
  TCCGGAACAAATCAA  GTTTTTG  AAGCC AAAA CC TGACATCGTGAAAG   AAATAAAC   GTTTGTAATA G TA TATCT    GATCC A TTTTCTAA TAGAACACTAAATGTCC TTTGACACGTTAATCAAAAATAAAAGCA AT TAAATTA  AAG TA GTACACGGTGTTTTAAGCTACACTG  TCTTAGAACTT          AAAAA   ACTTGATTT   
AA               -G       AA     -    G  T              CAA        --T          A C  A     CATA     G A        A                 A                            A  A       CG   -  C                         CC           TTCTAAAACC     CCC         GTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End