Plant MITE

SE2831137

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10142
Sorghum bicolor
SE2831137
hAT
Hat16
chromosome_7:6052714-6053277
ATTATCTC
TATAGATGGCCA

Secondary structure and sequence

TSD TIR

5'

3'

ATTATCTC    G       ----  A     - -    GGCCGGCCCGGCCCGGGCCCGAGCCGGGCACGGGCCGTAGCGTGCCGTGCCGATTTGGCCCACGTGCCTGCCGTGCCGTGCCTCAGCGGCCCGCGTGCCTGGCCTTCGGCCCAAGCACGGGCCCACGGGCTGACTTCGTGCCGTGCCGGCCCGCGTGCCCGGTGGGCCGGTCCGGCCCATAGCCCGGTTTTGTAAAAAAAAACAAAATAACCACACAATGACAATGATCACTTCACCAACATAATG
        TATA ATGGCCA    CC GGCCG G GCCG                                                                                                                                                                                                                                                      
        |||| |||||||    || ||||| | ||||                                                                                                                                                                                                                                                      C
        ATAT TACCGGT    CG GGCTC G GCTG                                                                                                                                                                                                                                                      
CTCTATTA    A       ACAT  -     C T    CCGGGCCGGGTGCCGTGCCGTAAAACCGGGCCGGGCTCGTGCCGGGCCGTGCCATTGAGCACCCGGGCCCGGCCGGGCCGGGCCACCACGCCCGGCACGAACCCGGCTGGAGACTCGGGCGCCCGACCGTGCCGTGCCGGGCTCAAAATCCCCAACCGTAATATAATGTACAAAAATATAGTAAAGATACTAAATGCTGACTCTAACACTTAGACTCTTCAACTCTCAACATTTTTTAACTAATAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831137

ATTATCTCTATAGATGGCCACCAGGCCGGGCCGGGCCGGCCCGGCCCGGGCCCGAGCCGGGCACGGGCCGTAGCGTGCCGTGCCGATTTGGCCCACGTGCCTGCCGTGCCGTGCCTCAGCGGCCCGCGTGCCTGGCCTTCGGCCCAAGCACGGGCCCACGGGCTGACTTCGTGCCGTGCCGGCCCGCGTGCCCGGTGGGCCGGTCCGGCCCATAGCCCGGTTTTGTAAAAAAAAACAAAATAACCACACAATGACAATGATCACTTCACCAACATAATGCCATAATCAATTTTTTACAACTCTCAACTTCTCAGATTCACAATCTCAGTCGTAAATCATAGAAATGATATAAAAACATGTAATATAATGCCAACCCCTAAAACTCGGGCCGTGCCGTGCCAGCCCGCGGGCTCAGAGGTCGGCCCAAGCACGGCCCGCACCACCGGGCCGGGCCGGCCCGGGCCCACGAGTTACCGTGCCGGGCCGTGCTCGGGCCGGGCCAAAATGCCGTGCCGTGGGCCGGGCCGTCGTGCCTCGGGCTACATGGCCATATATAATTATCTC

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