SE2831143

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10148
  • Sorghum bicolor
  • SE2831143
  • hAT
  • Hat44
  • chromosome_8:5702278-5702768
  • GTCGCGAG
  • TCGCGAGCAAGGTTTTCTTTTTCGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
G      G  A                AGGAAAAT   T     ACCTGCCGATAAATAAGAAATTTCGGACATTTCAGAAATTTCGGATGAAATTTAAATAAATTCAAATTGATTTTTTAAAAAATTTGACATCATTTTACTAAAAAAGCTTTCTAATATATCACTCATCACAAATTTATATAATATTAACGAAATAACACAATATATTATTGCGGTAGTATAGCGGGCTGACGGTGGGCGAGCTGCAT
 TCGCGA CA GGTTTTCTTTTTCGGT        TTT TCGGC                                                                                                                                                                                                              
 |||||| || ||||||||||||||||        ||| |||||                                                                                                                                                                                                               
 AGCGCT GT CCAAAAGAAAAAGCCG        CTT TAAAG                                                                                                                                                                                                              
G      G  C                --------   -     CGGCTTTAAAGGCTTTAAAGCGTAAAAAGTCACTCCAGGCTTTTTTAAAAACATAGCCAGTTTAAAAAGCCAATTTAAGTACAAAGCGAAGTTTTAATGAGGTTTGTTGTTATTTTACTGGGTGGTATAGAAGATCAGAATAGTTTCGGGATTTAAAGAAGTTTTAATAAATTAAAAGAGTGAGTGTATAAGGCACTGTGATCGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3