SE2851146

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10151
  • Sorghum bicolor
  • SE2851146
  • PIF/harbinger
  • To1
  • chromosome_3:10764149-10764640
  • TAA
  • AGGCCTCGTCTAGTTTTGGAAAAATTTTG

Secondary structure and sequence

TSD    TIR
5'



3'
TA      C  C  G    G   AAA     -AATTTC     T   GCAC         T              A                     A                 -      A A G       C A                                 T          C GC              C         T           G  -------------              AAAC
  AGGCCT GT TA TTTT GAA   TTTTG       GCTAC GTA    TTTTGTTTG TTGTGGCAAATATT TTCAATCATAGACTAACTAGG TCAAAAGATTCGTCTCG CGATTT C G TAAACTG G AATTAGTTTTTGTTTTCGTCTATATTTAATGTT CATGCATGTG C  AAGATTCGATGTGA GGGGAATCT GAAAAATTTTG CA             ACTAAACAAGGCCT    
  |||||| || || |||| |||   |||||       ||||| |||    ||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||| | | ||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |  |||||||||||||| ||||||||| ||||||||||| ||             ||||||||||||||    A
  TCCGGA CA AT AAGG TTT   AAAAT       CGATG CAT    AAAGCAAAT AACACTGTTTATAA AGGTTAGTATCTGATTGATCC AGTTTTCTAAGCAGAGC GTTAAA G T GTTTGAC C TTAATCAAAAATAAAAGTAGATATAAATTATGA GTACGTATGC G  TTCTAAGCTACACT CCCCTTAGA CTTTTTAAAAC GT             TGATTTGTTCCGGA    
AA      A  A  G    G   -AA     GTTTTAA     T   AGAA         T              C                     G                 A      - C G       A A                                 T          A AT              A         -           -  TTTTAAAACCCCT              ATAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End