SE2811149

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10154
  • Sorghum bicolor
  • SE2811149
  • Tc1/Mariner
  • St42
  • chromosome_6:58743669-58743909
  • TA
  • TACTACCTCCGTTTGCGTTTACTTGTCACCAAACTTTTACTGTAGCAATTTTGACTATATGTTTTTTTCTGCAAAAGATTTTTAGATACATCAA

Secondary structure and sequence

TSD    TIR
5'



3'
    -A          C                AC              T         A           G A     T          A    GTTTTCAC         T  TTAT    TA
TACT  CCTCCGTTTG GTTTACTTGTCACCAA  TTTTACTGTAGCAA TTTGACTAT TGTTTTTTTCT C AAAGA TTTTAGATAC TCAA        ATATATGAT CT    TGAA  
||||  |||||||||| ||||||||||||||||  |||||||||||||| ||||||||| ||||||||||| | ||||| |||||||||| ||||        ||||||||| ||    ||||  T
ATGA  GGAGGCAAAC CAAATGAACAGTGGTT  AAAATGACATCGTT AAACTGATA ATAAAAAAAGA G TTTTT AGAATCTATG AGTT        TATATATTG GA    ACTT  
    AG          A                GA              T         G           A A     T          A    -------A         T  --TT    CA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End