SE2851153

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10158
  • Sorghum bicolor
  • SE2851153
  • PIF/harbinger
  • To2
  • chromosome_10:7749945-7750413
  • TAA
  • AGGCCTTGTTTAGTTCCAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TA               -C    TTTT      AAATCGAC       C            ATT                      G     C  C C      G           CA    -  ACA        C           A   C      T           C        -  -A  A    A     ATA        -     A     CAAAATTTTTTA A      CCT
  AGGCCTTGTTTAGTT  CAAA    TTTGGA        ACTATAG ACTTTCGTTTGT   TGACAAATATTGTCCAATCATG ACTAA TA G TCAAAA ATTTGTCTCGT  ATTT CG   AAACTGTG AATTAGTTTTT TTT TGTCTA ATTTAATGCTC ATGTATGT CT  AA ATTC ATGTG   GGGAATCT GAAAT TTTTG            G AACTGG   
  |||||||||||||||  ||||    ||||||        ||||||| ||||||||||||   |||||||||||||||||||||| ||||| || | |||||| |||||||||||  |||| ||   |||||||| ||||||||||| ||| |||||| ||||||||||| |||||||| ||  || |||| |||||   |||||||| ||||| |||||            | ||||||    
  TCCGGAACAAATCAA  GTTT    AAACCT        TGATATC TGAAAGCAAACA   ACTGTTTATAACAGGTTAGTAT TGATT AT C AGTTTT TAAATAGAGCA  TAAA GT   TTTGATAT TTAATTAAAAA AAA GCAGAT TAAATTATGAG TACGTACA GG  TT TAAG TACAC   CTCTTAGA CTTTA AAAAC            C TTGATT   
AA               CC    -TTT      AAAACCCA       A            AAC                      A     A  C C      G           -C    T  CCG        A           C   A      T           A        C  CG  C    C     CGC        A     A     ------------ C      TGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End