SE2831155

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10160
  • Sorghum bicolor
  • SE2831155
  • hAT
  • Hat78
  • chromosome_4:52366722-52367075
  • ACGGACGA
  • CGGACGACAGTGGCGGGCGCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
A  GA  A               GATT  ---AGG     GTAT  AAAAAAAACTTGACAACTAGTAAATGGCTTCAAAATTTTTGACAACCAAATGGCTCATATTCGACATGTATAGTGCCATATATGATATATACTATATATATATATATAGTTCATGCTACCGATGGAGTTTGAGAA
 CG  CG CAGTGGCGGGCGCAG    TG      GCTGG    TC                                                                                                                                       
 ||  || |||||||||||||||    ||      |||||    ||                                                                                                                                        
 GC  GC GTCGCCGCCCGTGTT    AC      CCATA    AG                                                                                                                                       
A  AG  A               -AAC  AAGTAA     ----  TCAACTTATGGGTTTTAAAAACCGTTTTTTTATATATATATATATCATAAATATGTATATACATAATCACATATATTCTTTTTGTTTTTTATAACGTGGACAATGTGAGCACGTTTCCACTTAATGTATTTTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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