SE2851157

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10162
  • Sorghum bicolor
  • SE2851157
  • PIF/harbinger
  • To2
  • chromosome_10:14430047-14430294
  • TAA
  • AGGCCTTGTTTAGTTCCCAAAAAATTTTGCAAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            G   CCA         -GCA     TTTC      CCCATCACATCGAATCTTTAGACGCATGCATAGAGTATTAAATATAGATGAAAATAAAAACTAATTACACAGTTTGGTC
  AGGCCTTGTTTA TTC   AAAAATTTT    AAATT    AGATTT                                                                               
  |||||||||||| |||   |||||||||    |||||    ||||||                                                                                
  TCCGGAACAAAT AAG   TTTTTAAAA    TTTAG    CTGTGA                                                                               
AA            A   ---         ATCC     ----      CATTGTGAAAGCAAACATAAACTGTTTATAACAGGTTAGTATCTGATTAATCCGAATTTTCTAAGCAGAGCAGTTAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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