Plant MITE

SE2831159

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10164
Sorghum bicolor
SE2831159
hAT
Hat79
chromosome_2:561730-562014
TCCGCCAT
GCCATCAGGGGCGGAGG

Secondary structure and sequence

TSD TIR

5'

3'

TCC  CAT   G        -------------------------CA    TCTGGCAAGGTACGGCAGCCATACAAAAGACTGAAAGACTATTATGTATATACGTAAAATACTATACAGTACTGATGGATTTAATGGCTGAGCCGCTGTCTCCC
   GC   CAG GGCGGAGG                           GCTA                                                                                                        
   ||   ||| ||||||||                           ||||                                                                                                         
   CG   GTC CCGCCTCC                           ATAT                                                                                                        
TAC  CCT   A        ATCCTTATAAAATATCCACACCGCCAA    TACATATTATATTGATAGTTTATATGTTCCTGTAATCCTTTACTAAATAACCTTGTAATAGTTTTATAAATATAATGAAACACTAGTCGTTTATTTTATCTGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831159

TCCGCCATCAGGGGCGGAGGCAGCTATCTGGCAAGGTACGGCAGCCATACAAAAGACTGAAAGACTATTATGTATATACGTAAAATACTATACAGTACTGATGGATTTAATGGCTGAGCCGCTGTCTCCCATGTCTATTTTATTTGCTGATCACAAAGTAATATAAATATTTTGATAATGTTCCAATAAATCATTTCCTAATGTCCTTGTATATTTGATAGTTATATTATACATTATAAACCGCCACACCTATAAAATATTCCTACCTCCGCCACTGTCCGCCAT

Copy Cancel