SE2831167

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10172
  • Sorghum bicolor
  • SE2831167
  • hAT
  • Hat80
  • chromosome_5:4997534-4997706
  • TTAGAGGT
  • CAGTGGCGAAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAGAGGT            CACATACAAGGCA    -    ACATGCACCCACAAAAAAATTAAACACTATTAAGTAAATCAATTTTTCACT
        CAGTGGCGAAGC             GTGG GTGC                                                   
        ||||||||||||             |||| ||||                                                    
        GTCACCGCTTCG             TCTC TTTA                                                   
TGGAGATT            ------------A    G    TTTTCCCACCACGTAAAGAGAATATTTTTGTATTTGAGATGGATATTAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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