SE2811170

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10175
  • Sorghum bicolor
  • SE2811170
  • Tc1/Mariner
  • St14
  • chromosome_8:3192838-3193092
  • TA
  • TACTCCCTCCATTTATTTAAGTATCACATTTGATTTGTTCTAAGTGAAAC

Secondary structure and sequence

TSD    TIR
5'



3'
      C  CA   -ATT     A             G        G    ---ATCGCAATC    - TCAACCATTTTTAAAATCCTTATAGTTTCACAATATATGAATTATATATTATGATAGTATT
TACTCC TC  TTT    TAAGT TCACATTTGATTT TTCTAAGT AAAC            TTTG A                                                             
|||||| ||  |||    ||||| ||||||||||||| |||||||| ||||            |||| |                                                              
ATGAGG AG  AAA    ATTCA AGTGTAAATTAAA AGGATTCA TTTG            ATGA A                                                             
      A  AC   AAAT     C             A        G    CACACATAAAAA    T ATTAAAATGTTTTCATATATCAAAGTACAGTATTATAATATAAAAATTTAAATAATACTCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End