Plant MITE

SE2811171

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10176
Sorghum bicolor
SE2811171
Tc1/Mariner
St6
chromosome_6:54634514-54634775
TA
TACTCCCTCTGTCCCTGAAAGCTTCAATTCCTAGA

Secondary structure and sequence

TSD TIR

5'

3'

                       T     CC    ATCTG    ---          GTTT            C              -   -----CAA     ATAACATAAAATGAGTATCTTATGAAAATATA
TACTCCCTCTGTCCCTGAAAGCT CAATT  TAGA     TGTC   AGTCAAACTT    AACTTTGACCAA TTTATAGAAAAAAA CAT        TATGT                                
||||||||||||||||||||||| |||||  ||||     ||||   ||||||||||    |||||||||||| |||||||||||||| |||        |||||                                 
ATGAGGGAGGCAGGGACTTTCGA GTTGA  ATCT     ACAG   TCAGTTTGAA    TTGAAACTGGTT AAATATCTTTTTTT GTG        TATCA                                
                       C     AT    ---CA    GAT          AATT            T              T   ATTCTAAA     TGGTTTAATTATGGTAATCTAAATAGTAACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2811171

TACTCCCTCTGTCCCTGAAAGCTTCAATTCCTAGAATCTGTGTCAGTCAAACTTGTTTAACTTTGACCAACTTTATAGAAAAAAACATCAATATGTATAACATAAAATGAGTATCTTATGAAAATATATTCAATGATAAATCTAATGGTATTAATTTGGTACTATAAATCTTAGTGTTTTTTTTCTATAAATTTGGTCAAAGTTTTAAAAGTTTGACTTAGGACAACTCTATAAGTTGCAGCTTTCAGGGACGGAGGGAGTA

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