SE2851173

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10178
  • Sorghum bicolor
  • SE2851173
  • PIF/harbinger
  • To14
  • chromosome_10:49698354-49698601
  • TTA
  • AGGCCTTGTTTAGTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT            G    -----------CAAAATATT    -  A    TTCATATTCCCCATCACATCGAATCTTGCGGCACATACATAGAGCACTAAATATAGATAAAAGAAATAACTAATTACAC
  AGGCCTTGTTTA TTCC                    TTGC AA ATTT                                                                               
  |||||||||||| ||||                    |||| || ||||                                                                               A
  TCCGGAACAAAT AAGG                    TATC TC GTGA                                                                               
AT            G    TTAAAAAAAAGCTTTATCCT    A  -    AAGCAAACATAAACTGTTTATAACAGGTTAGTACATAATTGATCCGAATTTTCTAAGCAGAGCGTTTAATATCCATTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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