SE2851176

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10181
  • Sorghum bicolor
  • SE2851176
  • PIF/harbinger
  • To2
  • chromosome_3:63998227-63998475
  • TAG
  • GGGCCTTGTTTAGTTCCCAAAAAATTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 C    AA     C     ---------   TC  --   --------- CCCGTCACATCGAATCTTTAGACACATGCATGAAGTATTAAATATAAATAAAAATAAAAACTAATTGC
  GGGCCTTGTTTAGTTCC AAAA  TTTTG AAAAT         TTT  AG  ATT         C                                                                    
  ||||||||||||||||| ||||  ||||| |||||         |||  ||  |||         |                                                                     
  TCCGGAACAAATCAAGG TTTT  AAAAC TTTTA         TCG  AA  AGC         C                                                                    
GA                 -    AC     A     CCTATGACA   --  AA   AAACATAAA TGTTTATAACAGATTAATATCTGATTGATCCGAGTTTTCTAAACAGAACAGTTAAGGCTGGTTTGACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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