SE2851177

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10182
  • Sorghum bicolor
  • SE2851177
  • PIF/harbinger
  • To2
  • chromosome_9:5911519-5911766
  • TTA
  • AGGCCTTGTTTAGTTCTAAAAAATTTTGCAAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT              T                    TTTC     -TCC  TCACATCGAATCTTTAGACGCATGCATGGAGTATTAAATATAGATGAAACTAAAAACTAATTGCACAGTTTGGT
  AGGCCTTGTTTAGT CTAAAAAATTTTGCAAAATT    AGATT    CG                                                                          
  |||||||||||||| ||||||||||||||||||||    |||||    ||                                                                          C
  TCCGGAACAAATCA GGTTTTTTAAAACGTTTTAG    CTGTG    CG                                                                          
AT              C                    ----     ACAT  TGAAAGCAAACATAAACTGTTTTTAATAGGTTAGTACCTGATTGATCCGAGTTTTCTAAGCAGAGCAGTTAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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