SE2851178

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10183
  • Sorghum bicolor
  • SE2851178
  • PIF/harbinger
  • To108
  • chromosome_5:27135263-27135832
  • TAA
  • AGAGCATCTCCAACGGTTTGCCA

Secondary structure and sequence

TSD    TIR
5'



3'
TA             C      C  -TTCTA             -   A    G   -    --   AAAATCACTCCTCCAACGGTTTTGCAAACGGGTTTGCCATTTTAGTAAACTTGGCATTTGAGAGGCTCCCATTGGCATATTTGGGAGTTGGCTTTTGGATTGGCAAACGCTTACGGCCGGTTTTCCTGCGTCAATTCTGTGCGCGGCCTGGTCTCTTTGGCGCCGTTTCCTTCGTCGTAGGGAGTCCTCGCGCCAAATAGAGTCCGCGCCGCCATTGGTT
  AGAGCATCTCCAA GGTTTG CA      GTTTGGCATTTGT GTT TTTG CAA AAAG  GTA                                                                                                                                                                                                                            
  ||||||||||||| |||||| ||      ||||||||||||| ||| |||| ||| ||||  |||                                                                                                                                                                                                                            T
  TCTCGTGGGGGTT CCAAAC GT      CAAACCGTAAACA CAA AAAC GTT AGGG  AAC                                                                                                                                                                                                                            
AA             A      C  TAAAAC             A   C    G   G    TT   ATTTACGTTTCCTTTTTTATACCGGTAGGAGTTACCAAACCGTAAAACCTGAACCGTTAATGGATCACCTCTAGCGAGCCGACGCACCTACGTTACCGGCGAGCGCACAAAGATAGGTCTGCGCGCACTAGAAGTCCCTCCCTACATCGTCTGCCGCATAAAGTTAACGCAAGTCCCTCCCTACTGCATCGTCTGAGCTAAACGCAGAAACTCAGCGCCG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End