Plant MITE

SE2851180

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10185
Sorghum bicolor
SE2851180
PIF/harbinger
To2
chromosome_7:55778275-55778523
TTA
AGGCCTTGTTTAGTTCCTTCACGAAATCT

Secondary structure and sequence

TSD TIR

5'

3'

TT            G    T  A        TTTC   ACACTGTAACACTTTCGTTTGTTTGTGGTAATTATTGTCCAATCATAGATTAACTAGGCTCAAAAGATTCATCTCGTAAATTTCGACC
  AGGCCTTGTTTA TTCC TC CGAAATCT    GCG                                                                                        
  |||||||||||| |||| || ||||||||    |||                                                                                         
  TCCGGAACAAAT AAGG GG GTTTTAGG    TTT                                                                                        
AT            G    T  -        --TT   GAAAAGTTCTAAGAGACAGTGTAGCTTAGAAATTTGCGTACGTATCTCATAATTTATATTTGCTTTTATTTTTGATTAACGTGTCAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851180

TTAGGCCTTGTTTAGTTCCTTCACGAAATCTTTTCGCGACACTGTAACACTTTCGTTTGTTTGTGGTAATTATTGTCCAATCATAGATTAACTAGGCTCAAAAGATTCATCTCGTAAATTTCGACCAAACTGTGCAATTAGTTTTTATTTTCGTTTATATTTAATACTCTATGCATGCGTTTAAAGATTCGATGTGACAGAGAATCTTGAAAAGTTTTTGGATTTTGGGTGGAAGTAAACAAGGCCTTA

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