Plant MITE

SE2811185

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10190
Sorghum bicolor
SE2811185
Tc1/Mariner
St9
chromosome_6:50048455-50048712
TA
TACTCCCTCCATCTCAAATTATAAGGCATTCCAAAAATCTTGGAGAGTCA

Secondary structure and sequence

TSD TIR

5'

3'

                                  A               AAACAT   -A            A     G  A  AT  TAAAG        -----------C    AA     ATAC   GAAAAT
TACTCCCTCCATCTCAAATTATAAGGCATTCCAA AATCTTGGAGAGTCA      CTT  AGTTTGACCAAA TTATA GA AA  TA     ATTTGTGA            ATCA  TAGGT    TAT      
|||||||||||||||||||||||||||||||||| |||||||||||||||      |||  |||||||||||| ||||| || ||  ||     ||||||||            ||||  |||||    |||      A
ATGAGGGAGGTAGGGTTTAATATTCCGTAAGGTT TTAGGATCTCTCAGT      GAA  TCAAACTGGTTT AATAT CT TT  AT     TAAATACT            TAGT  ATCCA    ATA      
                                  C               ------   AC            A     G  A  CT  TATCG        ATAATTGATATA    -A     AGAA   ATTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2811185

TACTCCCTCCATCTCAAATTATAAGGCATTCCAAAAATCTTGGAGAGTCAAAACATCTTAAGTTTGACCAAAATTATAGGAAAAATTATAAAGATTTGTGACATCAAATAGGTATACTATGAAAATATAATTAATAAAGAACCTAATGATATATAGTTAATATCATAAATGCTATTATCTTATCGTATAAATTTGGTCAAACTCAAAGTGACTCTCTAGGATTCTTGGAATGCCTTATAATTTGGGATGGAGGGAGTA

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