SE2851187

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10192
  • Sorghum bicolor
  • SE2851187
  • PIF/harbinger
  • To1
  • chromosome_5:2954822-2955069
  • TAA
  • AGGCCTTGTTTAGTTCCGAAAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              ---         ATTTT  A    --   A      CACTTTC       TGTGACAAATATTATCCAATTATGGACTAACTAGGATCAAAAGATTCGTCTCGCGATTTCCAGC
  AGGCCTTGTTTAGT   TCCGAAAAG     GG TTTC  GGT CCGTAA       GTTTGTT                                                                
  ||||||||||||||   |||||||||     || ||||  ||| ||||||       |||||||                                                                T
  TCCGGAACAAATCA   GGGTTTTTC     TC AAAG  CTA AGGGGC       AGTGTAG                                                                
AA              AGT         GTTTT  A    TT   -      -------       CTTAGAACGCCGTGTACGTACTTCGTAATTTATATCTGCTTTCGTTTTTGATTAATGTGTCAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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