SE2851192

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10197
  • Sorghum bicolor
  • SE2851192
  • PIF/harbinger
  • To2
  • chromosome_1:7566066-7566314
  • TAA
  • AGGCCTTGTTTAGTTCCGAAAAAATTTCGGATTTCGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              -----------               -      G TACTGTAG   TT   -T      TTG      ATTATCTAATCATAAACTAACTAGGATCAAAAGATTCGTCTCACGATTTA
  AGGCCTTGTTTAGT           TCCGAAAAAATTTCG GATTTC C        CAC  TCG  TTTTAT   ACAAAT                                                  
  ||||||||||||||           ||||||||||||||| |||||| |        |||  |||  ||||||   ||||||                                                  C
  TCCGGAACAAATCA           AGGTTTTTTTAAAGT CTAAGG G        GTG  AGC  AGAATG   TGTACG                                                  
AA              AGTGGGGCTTT               T      G ------TA   -T   TT      CCG      TACTTCGTAATTTATATCTGCTTTTATTTTTGATTGATGTGTCAAACAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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