Plant MITE

SE2811196

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10201
Sorghum bicolor
SE2811196
Tc1/Mariner
St13
chromosome_10:50651128-50651366
TA
TACTCAATCCATCCCAAATTGTAAGTCGTTTGACTTTTTTAATATCAAGTTTGACCACTCGTCTTATTCAAAGTTTTATACAAAATATCACTTTTTTTGTTGTGTATTGGTTTATT

Secondary structure and sequence

TSD TIR

5'

3'

     AA                                 A  A                             -T      C   -   -   CTT   TT     GTA    TTT   AAT
TACTC  TCCATCCCAAATTGTAAGTCGTTTGACTTTTTT AT TCAAGTTTGACCACTCGTCTTATTCAAAG  TTTATA AAA ATA TCA   TTT  GTTGT   TTGG   ATT   
|||||  ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||  |||||| ||| ||| |||   |||  |||||   ||||   |||    
ATGAG  AGGTAGGGTTTAACATTCAGCAAACTGAAAAAA TG GGTTTAAACTGGTGAGCAGAATAAGTTTT  AAATAT TTT TAT AGT   AAA  CAGTA   AACT   TGA   
     GG                                 A  G                             TT      A   A   C   -TT   TT     -AG    TCT   AAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2811196

TACTCAATCCATCCCAAATTGTAAGTCGTTTGACTTTTTTAATATCAAGTTTGACCACTCGTCTTATTCAAAGTTTTATACAAAATATCACTTTTTTTGTTGTGTATTGGTTTATTAATAAAAGTTCTTCAAGAATGACTTAAATTTGACTATATTTATATAAATTTTTTGAATAAGACGAGTGGTCAAATTTGGGGTAAAAAAAGTCAAACGACTTACAATTTGGGATGGAGGGAGTA

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