Plant MITE

SE2851198

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10203
Sorghum bicolor
SE2851198
PIF/harbinger
To2
chromosome_4:57839632-57839880
TTA
AGGCCTTGTTTAGT

Secondary structure and sequence

TSD TIR

5'

3'

TT              TCACCCAAA     AAAAAGTTTTCAAGATTCTCCGTCACATCGAATCTTGCGGCACATGCATGAAGCATTAAATATAGACGAAAGCAAAAACTAATTACACAATTTAGCTGG
  AGGCCTTGTTTAGT         AAAGC                                                                                                   
  ||||||||||||||         |||||                                                                                                    
  TCCGGAACAAATCA         AGGCT                                                                                                   
AT              ---------     TTTCTAAAGCCTTAAGCCATGACATCGTGAAAGCAAACAAACACTGTTTATAATAGATTAATATCTGATTGATCCTAGTTTTCTAAGCAGAGTGCTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851198

TTAGGCCTTGTTTAGTTCACCCAAAAAAGCAAAAAGTTTTCAAGATTCTCCGTCACATCGAATCTTGCGGCACATGCATGAAGCATTAAATATAGACGAAAGCAAAAACTAATTACACAATTTAGCTGGAAATCGTGAGACGAATCTTTTGATCCTAGTTAGTCTATAATTAGATAATATTTGTCACAAACAAACGAAAGTGCTACAGTACCGAATTCCGAAATCTTTTCGGAACTAAACAAGGCCTTA

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