Plant MITE

SE2851201

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10206
Sorghum bicolor
SE2851201
PIF/harbinger
To1
chromosome_5:49879659-49879905
TAT
GGCCTTGTTTAGTTCA

Secondary structure and sequence

TSD TIR

5'

3'

TAT                AAAAAAA       T     --  CTGTAGCACTTTTGTTTTTATTTGACAAATATTGTCCAATTATGAACTAAATAGGATCAAAAGATTCGTCTCGCGATTTACAGACA
   GGCCTTGTTTAGTTCA       TTTCGGA TTCGC  TA                                                                                      
   ||||||||||||||||       ||||||| |||||  ||                                                                                       
   CCGGAACAAATCAAGT       GGGGCTT AGGTT  TC                                                                                      
  T                -------       T     TT  AAAAGTTCTAAGGGGCAGTGTAGCTTAGAACGCCGTGTACGTACTTCGTAATTTATATCTGCTTTTATTTTTGATTAATGTGTCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851201

TATGGCCTTGTTTAGTTCAAAAAAAATTTCGGATTTCGCTACTGTAGCACTTTTGTTTTTATTTGACAAATATTGTCCAATTATGAACTAAATAGGATCAAAAGATTCGTCTCGCGATTTACAGACAAACTGTGTAATTAGTTTTTATTTTCGTCTATATTTAATGCTTCATGCATGTGCCGCAAGATTCGATGTGACGGGGAATCTTGAAAACTTTTTGGATTTCGGGGTGAACTAAACAAGGCCT

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