SE2811209

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10214
  • Sorghum bicolor
  • SE2811209
  • Tc1/Mariner
  • St9
  • chromosome_7:60558140-60558400
  • TA
  • TACTCCCTCCATCCCAAATTGTAAGTCATTCCAAGAATCTTGGAAAGTCAAAGCATCTCAAGTTTGACCAAATTTATA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                            A                           T     ---------    AGGATAATCATTTATGATATCAACTAAGTATCATTAGGTTTTTC
TACTCCCTCCATCCCAAATTGTAAGTCATTCCAAGAATCTTGGA AGTCAAAGCATCTCAAGTTTGACCAAA TTATA         TGGT                                            
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||         ||||                                             
ATGAGGGAGGTAGGGTTTAACATTCAGTAAGGTTCTTAGAATCT TCAGTTTCGTAGAGTTCAAACTGGTTT AATAT         TGTT                                            
                                            C                           T     CTTTTTTAA    TCAAAACATCGTAGTTTATCTATATGATACTTTTATATTAATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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