SE2851210

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10215
  • Sorghum bicolor
  • SE2851210
  • PIF/harbinger
  • To21
  • chromosome_9:8666876-8667059
  • TAA
  • AGGCCCTGTTTGGTTCCACCAACTAAATTTTAGCTAGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                                       AAAATTAT      TACTCTTAGGTGACTAATGGAACTAAACTATTTTAGCTCTT
  AGGCCCTGTTTGGTTCCACCAACTAAATTTTAGCTAGCT        TTTAGG                                         
  |||||||||||||||||||||||||||||||||||||||        ||||||                                          
  TCCGGGACAAACCAAGGTGGTTGATTTAAAATCGATCGA        TTTGAA                                         
AA                                       --------      ATCAGTAAAATCATCGATTTCAAGGTTTGTGTAACTGATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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