SE2851214

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10219
  • Sorghum bicolor
  • SE2851214
  • PIF/harbinger
  • To4
  • chromosome_1:71472841-71473090
  • TTA
  • AGGCCTTGTTTAGTTTCGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                    --------A     ---  ACAAAAATTTTCAGATTCTCCGTCCCATCGAATCGTGCGGCACATGCATGAAACATTAAATATAAATAAAAACAATAATTAATTATATA
  AGGCCTTGTTTAGTTTCGAA         AAAAT   TT                                                                                         
  ||||||||||||||||||||         |||||   ||                                                                                         A
  TCCGGAACAAATCAAGGTTT         GTTTT   TG                                                                                         
AT                    AAAAAAACC     ATT  TAACATCGTAAAAGCAAACATAAACTGTTTATAATAGATTAGTACCTGATTAATCTGAGTTTTCTAAGCAGAGCGTTTAATGTCTGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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