SE2851215

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10220
  • Sorghum bicolor
  • SE2851215
  • PIF/harbinger
  • To1
  • chromosome_1:66467644-66468120
  • TTA
  • AGGCCTTGTTTAGATCTAAATTTTTTTGGGA

Secondary structure and sequence

TSD    TIR
5'



3'
TT             ATC    TTT      G -TTCTAACACT   G  C        T           C      C   G  A AG               T           -     ATAGGT       C                 A               C       GT   --AC               -A       T          T  ----        -T AA  AA
  AGGCCTTGTTTAG   TAAA   TTTTGG A           GTA CA TTTCGTTT TATTTGACAAA ATTGTC AAT AT G  TAACTAGGTTTAAAA ATTTGTCTCGT GATTT      AACTGTG AATTAGTTTTTGTTTTC TTTATATTTAATGCT CATGCAT  GCC    AAGATTCGATGTGAC  GGAATCT GAAAAGTTTT TG    TTTTTGGG  G  CT  
  |||||||||||||   ||||   |||||| |           ||| || |||||||| ||||||||||| |||||| ||| || |  ||||||||||||||| ||||||||||| |||||      ||||||| ||||||||||||||||| ||||||||||||||| |||||||  |||    |||||||||||||||  ||||||| |||||||||| ||    ||||||||  |  ||  A
  TCCGGAACAAATC   GTTT   AAAACC T           CAT GT AAAGCAAA ATAAACTGTTT TAACAG TTA TA C  ATTGATCCGAGTTTT TAAGCAGAGCA TTAAA      TTGACAC TTAATCAAAAATAAAAG AGATATAAATTATGA GTACGTA  TGG    TTCTAAGCTACACTG  CCTTAGA CTTTTTAAAA AT    AAAAACCC  C  GA  
AT             AAA    -TT      G TTTACACTTAT   G  T        C           A      A   G  C GG               C           G     GCTGGT       A                 C               A       --   AGAT               CC       -          C  TTTA        TT CG  AC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End