SE2851216

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10221
  • Sorghum bicolor
  • SE2851216
  • PIF/harbinger
  • To3
  • chromosome_9:4545715-4546240
  • TAA
  • AGGCCTTGTTTAGTTCACCCAAAAAACCAAAAACTTTTCAAGTTTCTCCATCACATTGAATTTTGCGGCACATACATGGAGTATTAAATATGA

Secondary structure and sequence

TSD    TIR
5'



3'
TA                    AA     C     C  T     T      A              GC       A                 -  AATC                          A           A               A        C     T    AAC           AATAA        A      A     CAACCAAAAAA    AGCCTAAACAGAGATATTAGAAATCAACAAACACCACAAAC
  AGGCCTTGTTTAGTTCACCC  AAAAC AAAAA TT TCAAG TTCTCC TCACATTGAATTTT  GGCACAT CATGGAGTATTAAATAT GA    AAAATAAAAACTAATTGCACAGTTTG CTGTAAATCAC AGATGAATCTTTTGA CCTAGTTA TCCAT ATTG   AATGTTTATCA     AAACGAAA TGCTAC GTATC           TTTG                                         
  ||||||||||||||||||||  ||||| ||||| || ||||| |||||| ||||||||||||||  ||||||| ||||||||||||||||| ||    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||| ||||| ||||   |||||||||||     |||||||| |||||| |||||           ||||                                          
  TCCGGAACAAATCAAGTGGG  TTTTG TTTTT AA AGTTC AAGAGG AGTGTAGCTTAGAA  CCGTGTA GTACTTTGTAATTTATG CT    TTTTATTTTTGATTAATGTGTCAAAT GACATTTAGTG TCTGCTTAGAAAACT GGATCAAT AGGTA TAAC   TTATAAATAGT     TTTGCTTT ACGATG CATGG           CTTT                                         
AA                    AC     A     C  T     T      C              GA       C                 T  --GC                          C           C               A        C     T    CTA           GTTTG        C      C     -----------    AGAAAAGTGAAAAGCCTTGATTTGTTCCGGATTCACATCAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End