Plant MITE

SE2821217

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10222
Sorghum bicolor
SE2821217
Mutator
M6
chromosome_1:46522856-46523431
AATCAATAA
GAGTAAAATACACTGGCGGCTCTTTAACTTGTCGCCCTGTGCCACTTTGGTCCATGAACTTGCAAACGCGAAAAAGAGACCCCTAAACTTGTCAGCATGTGCCACTTTGGCCCATGAACTTGCAAACGCGAAAAAGTGCCCCCTGAACTTGTCGATCCGTGCCACTTTGAACCCTGAACATGCAAATACAAAAAATAACATCGGCTGCATGGCACTGTTCTGCCACGTGACCGCCTCTGGTAGGCCATGCATGGCACCGTTTACGGTGA

Secondary structure and sequence

TSD TIR

5'

3'

AATCAATAA                                  C                          G                A                                                                        TC                 A  C                    A                              C   A                                 C     CTTTTATAAT
         GAGTAAAATACACTGGCGGCTCTTTAACTTGTCG CCTGTGCCACTTTGGTCCATGAACTT CAAACGCGAAAAAGAG CCCCTAAACTTGTCAGCATGTGCCACTTTGGCCCATGAACTTGCAAACGCGAAAAAGTGCCCCCTGAACTTG  GATCCGTGCCACTTTGA CC TGAACATGCAAATACAAAAA TAACATCGGCTGCATGGCACTGTTCTGCCA GTG CCGCCTCTGGTAGGCCATGCATGGCACCGTTTA GGTGA          
         |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||          T
         CTCATTTTATGTGACCGCCGGGAAATTGAACAGC GGACACGGTGAAACCAGGTACTTGAA GTTTGCGCTTTTTCTC GGGGATTTGAACAGTCGTACACGGTGAAACCGGGTACTTGAATGTTTGCGCTTTTTCACGGGGGACTTGAAC  CTAGGCACGGTGAAACT GG ACTTGTACGTTTATGTTTTT ATTGTGGCCGACGTACCGTGACAAGACGGT CAC GGCGGAGACCATCCGGTACGTACCGTGGCAAAT CCACT          
AATAACTAA                                  A                          G                C                                                                        TT                 A  T                    -                              C   C                                 A     ACTACAGTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2821217

AATCAATAAGAGTAAAATACACTGGCGGCTCTTTAACTTGTCGCCCTGTGCCACTTTGGTCCATGAACTTGCAAACGCGAAAAAGAGACCCCTAAACTTGTCAGCATGTGCCACTTTGGCCCATGAACTTGCAAACGCGAAAAAGTGCCCCCTGAACTTGTCGATCCGTGCCACTTTGAACCCTGAACATGCAAATACAAAAAATAACATCGGCTGCATGGCACTGTTCTGCCACGTGACCGCCTCTGGTAGGCCATGCATGGCACCGTTTACGGTGACTTTTATAATTTTTGACATCATCACCATAAACGGTGCCATGCATGGCCTACCAGAGGCGGCCACCTGGCAGAACAGTGCCATGCAGCCGGTGTTATTTTTGTATTTGCATGTTCATGGATCAAAGTGGCACGGATCTTCAAGTTCAGGGGGCACTTTTTCGCGTTTGTAAGTTCATGGGCCAAAGTGGCACATGCTGACAAGTTTAGGGGCCTCTTTTTCGCGTTTGGAAGTTCATGGACCAAAGTGGCACAGGACGACAAGTTAAAGGGCCGCCAGTGTATTTTACTCAATCAATAA

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