SE2851225

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10230
  • Sorghum bicolor
  • SE2851225
  • PIF/harbinger
  • To22
  • chromosome_1:20371770-20372014
  • TAA
  • AGAGCAAGTATTATAGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA         ATT      ----------     -  AGCTGGCTAAATGCTGAGGTGGAGGAGAGAAGGGAGGAGAGAGAGGAGAAGCAGGCTGTAAGCTTACAGCCAGCTTAGGCACAGGAACCA
  AGAGCAAGT   ATAGTG          GGCTG TA                                                                                          
  |||||||||   ||||||          ||||| ||                                                                                           
  TCTCGTTCA   TATTAT          CGACC TC                                                                                          
AA         AAT      GTTGGGTAAA     G  CAAAAAACGTCGGAAGAGGGTCGGGTGGGTATGTTATCAATCGATAAGTGATAATTATGTACCGGGTGAATAGAGAGAGTGTTCCAAAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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