SE2831226

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10231
  • Sorghum bicolor
  • SE2831226
  • hAT
  • Hat1
  • chromosome_2:64150461-64150641
  • AACACTCA
  • CAGTGGCGAAGCTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
AACACTCA   T           AGCAAAT      G   -  CACTTAGCTTGTGGGTGCATAGATATCTTTCATAGGGGTGCATATATGG
        CAG GGCGAAGCTAG       TAGAGG GGG TG                                                 
        ||| |||||||||||       |||||| ||| ||                                                  
        GTC CCGCTTCGATC       GAATCC CCA CG                                                 
ACTCACAA   C           -GACAAT      -   A  TTTACGTGGGGGTTTTTAACATCTTTGTCACTAATCCAGGTTTTAAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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