SE2831228

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10233
  • Sorghum bicolor
  • SE2831228
  • hAT
  • Hat87
  • chromosome_10:53487987-53488568
  • CACATCAT
  • CAGTGGCGGGCGCAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CACATCAT              G ----ATTTAA       GTATTCAAAAAAAACTTGACAACTAAATGACTTTAAATTTTTTTGACAACCAAATAGCTCATATTCGGGCCTTGTTTAGTTCACCCTAAAAACAAAATTTTTTCAAGATTTTCTGTCACATCAAATCTTGCGGCACATGTATGAGCATTAAATATAGATGAAAAACAAAAACTAATTATACAGTTTGCCTGTAAATCATGAGACGAATCTTTTAAATCTAGTTATACCATGATTGGACAATATTTGTCAAAA
        CAGTGGCGGGCGCA G          GGGTTGG                                                                                                                                                                                                                                                            
        |||||||||||||| |          |||||||                                                                                                                                                                                                                                                             
        GTCACCGCCCGTGT T          CCATAAG                                                                                                                                                                                                                                                            
TACTACAC              G CAACAAGTAA       TCAACTTATGGGTTTTAAAAATCGTTTTTTAATATATATATATCATAAATATGTATACACATAATCACATATTTTTTTTGTTGTTTATAACGGAGGACAGTGTGAGCACGTTTCCACTTAATGCATTTTTATAAGAGTTTGAGGTAGCCATCGTACTTGATATATGTTATATATAGTATATACTGTGATATGTACAGCTCCGGAACAAATCTAGGTTTAATCGTAAAAATAAAACTGTGACATCGTAAAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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