SE2851233

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10238
  • Sorghum bicolor
  • SE2851233
  • PIF/harbinger
  • To2
  • chromosome_6:51456025-51456517
  • TAA
  • AGGCCTTGTTTAGTTCCAAAATTTTTTGCAAAATCGACACTGTAGCACTTTCGTTTGTATTTGATAAAAATTGTTCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTCAACCAAACTGTGCAATTAGTTTTTATTTTCATCTATATTTAATACTGCATGCATGCGTCTAAAGATTCGATGTGACGGAGAATCTGAAAAATTTTACAAAATTTTTTAGAACTAAG

Secondary structure and sequence

TSD    TIR
5'



3'
           TA                C    TT           C AC                    ATT   T   A                C     A                            A                             A               G                               A    C           A           -A        GCC
             AGGCCTTGTTTAGTTC AAAA  TTTTGCAAAAT G  ACTGTAGCACTTTCGTTTGT   TGA AAA ATTGTTCAATCATGGA TAACT GGCTCAAAAGATTCGTCTCGTCAATTTC ACCAAACTGTGCAATTAGTTTTTATTTTC TCTATATTTAATACT CATGCATGCGTCTAAAGATTCGATGTGACGG GAAT TGAAAAATTTT CAAAATTTTTT  GAACTAAG   
             |||||||||||||||| ||||  ||||||||||| |  ||||||||||||||||||||   ||| ||| |||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||  ||||||||    
             TCCGGAACAAATCAAG TTTT  AAAACGTTTTG C  TGACATCGTGAAAGCAAACA   ACT TTT TAACAGGTTAGTATCT ATTGA CCGAGTTTTCTAGGCAGAGTAGTTAAGG TGGTTTGATACGTTAATCAAAAATAAAAG AGATATAAATTATGA GTATGTACGCAGATTTCTAAGCTACACTGCC CTTA ACTTTTTAAAA GTTTTAAAAAA  CTTGATTT   
AATCCGGAACAAA                -    TT           T CA                    AAC   T   A                A     C                            C                             C               G                               C    T           C           CC        GTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End