SE2851238

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10243
  • Sorghum bicolor
  • SE2851238
  • PIF/harbinger
  • To2
  • chromosome_7:62833755-62834002
  • TAG
  • GGGCCTTGTTTAGTTCCTAAAAAATTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               CC      A              T  AATTCCCCGTCACGTCGAATCTTGCGGCATATGTATGGAGCATTAAATATAGATAAAAGAAAAAACTAATTGCACACTTTAA
  GGGCCTTGTTTAGTT  TAAAAA TTTTGCAAAATTTT CA                                                                                  
  |||||||||||||||  |||||| |||||||||||||| ||                                                                                   
  TCCGGAACAAATCAA  ATTTTT AAAACGTTTTACCT GT                                                                                  
GA               -A      A              -  AACATCGCGAAAACAAACATAAACTATTTATAACAGGTTAGTACTTGATTGATCCGAGTTTTCTAAGCAGAGCGTTTAAGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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