Plant MITE

SE2831245

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10250
Sorghum bicolor
SE2831245
hAT
Hat85
chromosome_3:18427322-18427525
CTCATGTC
CATGTCCAGTGGCGGA

Secondary structure and sequence

TSD TIR

5'

3'

CT    TC          GCTGG  AA  TTCACGACTAGGGCCAATACTATGAACCACCAACATCGGATCACATGTTAATGGACAAAAGTAATGCTAATATA
  CATG  CAGTGGCGGA     GG  CT                                                                          
  ||||  ||||||||||     ||  ||                                                                           
  GTAC  GTCGCCGCCT     CG  GA                                                                          
CT    TC          ATATT  --  TCCCGGTTATACCGGTACCGGGATCCGCACCCTTTTTTGTGATCTCATAAGGGAAACAAAAAAGGTCGATTTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831245

CTCATGTCCAGTGGCGGAGCTGGGGAACTTTCACGACTAGGGCCAATACTATGAACCACCAACATCGGATCACATGTTAATGGACAAAAGTAATGCTAATATATATTTAGCTGGAAAAAACAAAGGGAATACTCTAGTGTTTTTTCCCACGCCTAGGGCCATGGCCATATTGGCCCTAGGCTTATATCCGCCGCTGCTCATGTC

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